The Genealogical World of Phylogenetic Networks

Biology, anthropology, computational science, and networks in phylogenetic analysis

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Showing posts with label Median network. Show all posts
Showing posts with label Median network. Show all posts
Monday, June 1, 2020

To what degree are Median-joining networks phylogenetic?

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In a comment to the recent paper by Forster et al. (2020), Sánchez-Pacheco et al. (2020) argue that Forster et al.'s analysis is "...
Monday, May 4, 2020

Finding the CoV-2 root

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In my last post , I looked at the prospects and pitfalls of using Median networks to trace virus evolution in the case of the SARS-CoV-2 vi...
Monday, April 20, 2020

Using Median Networks to study SARS-CoV-2

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One software package essential for my research has been the free-/shareware N ETWORK by Fluxus Engineering. N ETWORK can (now) read in P ...
Monday, December 2, 2019

Trees informing networks explaining trees

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Working at the coalface of evolution, one phenomenon always intrigued me: How does the signal in the data build up a tree? Especially since...
Monday, February 18, 2019

Can we depict the evolution of highly conserved genes, such as the ribosomal RNA genes?

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Median networks have been designed to put within-species haplotypes into an explicit evolutionary framework. They are exclusively parsimony...
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